Summary Method for Bioenergetic Objects

Prints a detailed multi-section summary of a Bioenergetic object, covering species identity, parameter categories, environmental data statistics, diet composition, simulation settings, and overall readiness status. Complements print.Bioenergetic, which shows the compact single-page view.

Usage

# S3 method for class 'Bioenergetic'
summary(object, ...)

Arguments

object

Bioenergetic object

...

Additional arguments (not used)

Value

Invisibly returns the input object

Examples

# \donttest{
data(fish4_parameters)
sp   <- fish4_parameters[["Oncorhynchus tshawytscha"]]$life_stages$adult
info <- fish4_parameters[["Oncorhynchus tshawytscha"]]$species_info
bio  <- Bioenergetic(
  species_params     = sp,
  species_info       = info,
  environmental_data = list(
    temperature = data.frame(Day = 1:30, Temperature = rep(12, 30))
  ),
  diet_data = list(
    proportions = data.frame(Day = 1:30, Prey1 = 1.0),
    energies    = data.frame(Day = 1:30, Prey1 = 5000),
    prey_names  = "Prey1"
  ),
  simulation_settings = list(initial_weight = 100, duration = 30)
)
#> Bioenergetic object created for: Oncorhynchus tshawytscha
summary(bio)
#> FB4 Bioenergetic Model - Detailed Summary
#> =============================================
#> SPECIES:
#>   Scientific: Oncorhynchus tshawytscha
#>   Common: Chinook salmon (adult)
#> 
#> PARAMETERS:
#>   Consumption (9):
#>     CA = 0.303
#>     CB = -0.275
#>     CQ = 5
#>     CTO = 15
#>     CTM = 20.9
#>     ... (4 more)
#>   Respiration (10):
#>     RA = 0.00264
#>     RB = -0.217
#>     RQ = 0.06818
#>     RTO = 0.0234
#>     RTM = 0
#>     ... (5 more)
#>   Activity (2):
#>     ACT = 9.7
#>     BACT = 0.0405
#>   Sda (1):
#>     SDA = 0.172
#>   Egestion (4):
#>     FA = 0.212
#>     FB = -0.222
#>     FG = 0.631
#>     ... (1 more)
#>   Excretion (4):
#>     UA = 0.0314
#>     UB = 0.58
#>     UG = -0.299
#>     ... (1 more)
#>   Predator (9):
#>     PREDEDEQ = 1
#>     ED_data = NA
#>     ED_ini = NA
#>     ... (6 more)
#>   Source (1):
#>     ... (1 more)
#>   Notes (1):
#>     ... (1 more)
#> 
#> ENVIRONMENT:
#>   Temperature: 12°C (mean)
#>   Range: 12 - 12°C
#>   Duration: 30 days (1 to 30)
#> 
#> DIET:
#>   Prey species: 1
#>   Coverage: 30 days
#>   Main prey:
#>     1. Prey1: 100%
#>   Energy density: 5000 - 5000 J/g
#> 
#> SIMULATION:
#>   Initial Weight: 100 g
#>   Duration: 30 days
#> 
#> STATUS: Ready:  4 /4 components - Ready for fitting!
# }