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Process mortality parameters

Usage

process_mortality_params(mortality_params)

Arguments

mortality_params

Raw mortality parameters

Value

A list containing all elements of mortality_params with missing entries filled with defaults: base_mortality = 0.001, natural_mortality (copied from base_mortality), fishing_mortality = 0, predation_mortality = 0, optimal_temp = 15, thermal_tolerance = 5, and stress_factor = 2. If a reproduction sub-list is present, a spawn_pattern numeric vector (length 365) is appended.

Examples

process_mortality_params(list(base_mortality = 0.001,
                              natural_mortality = 0.001))
#> Warning: Using default optimal_temp = 15°C
#> Warning: Using default thermal_tolerance = 5°C
#> $base_mortality
#> [1] 0.001
#> 
#> $natural_mortality
#> [1] 0.001
#> 
#> $fishing_mortality
#> [1] 0
#> 
#> $predation_mortality
#> [1] 0
#> 
#> $optimal_temp
#> [1] 15
#> 
#> $thermal_tolerance
#> [1] 5
#> 
#> $stress_factor
#> [1] 2
#>