Plot Bioenergetic object setup

Plotting method for Bioenergetic objects to validate setup before simulation.

Usage

# S3 method for class 'Bioenergetic'
plot(x, type = "dashboard", save_plot = NULL, ...)

Arguments

x

Object of class Bioenergetic

type

Type of plot: "dashboard", "temperature", "diet", "energy"

save_plot

Optional path to save plot

...

Additional arguments

Value

Invisibly returns the input object x, called for its plotting side-effect.

Examples

# \donttest{
data(fish4_parameters)
sp   <- fish4_parameters[["Oncorhynchus tshawytscha"]]$life_stages$adult
info <- fish4_parameters[["Oncorhynchus tshawytscha"]]$species_info
bio  <- Bioenergetic(
  species_params     = sp,
  species_info       = info,
  environmental_data = list(
    temperature = data.frame(Day = 1:30, Temperature = rep(12, 30))
  ),
  diet_data = list(
    proportions = data.frame(Day = 1:30, Prey1 = 1.0),
    energies    = data.frame(Day = 1:30, Prey1 = 5000),
    prey_names  = "Prey1"
  ),
  simulation_settings = list(initial_weight = 100, duration = 30)
)
#> Bioenergetic object created for: Oncorhynchus tshawytscha
bio$species_params$predator$ED_ini <- 5000
bio$species_params$predator$ED_end <- 5500
plot(bio)

plot(bio, type = "temperature")

# }